6. Simulations¶
As scientists and engineers, we all know the importance of simulations in solving complex real-world problems safely and accurately. Simulations make information and data conveyable for better decision-making. d3VIEW provides the ability to manage, create, track, compare and share your simulations and their data more effortlessly and efficiently. The Simulations application is divided into four main parts: Preview, HPC Job, Files and Responses. In this tutorial, we’ll review navigating the home page and these sections, so you can start managing your simulations more effectively.
What Will Be Covered
- My Simulations Page
- Preview and Simulation Details
- Errors and Warnings
- HPC Job
- Simulation Files
- Simulation Responses
6.1. My Simulations¶
From the d3VIEW home page, click on the Simulations button in the left side panel to go to the Simulations main page.
Figure 1: Accessing Simulations
Here, you can submit a new simulation (1), sift through your simulations by using the quick filter buttons (2) or using the drop down or search bar in advanced filtering (3). Review and restore any of your deleted simulations at the bottom by clicking on Recycle (4).
Figure 2: All Simulations
We can utilize advanced filters when we want to look for specific simulation qualities such a solver type or termination type as demonstrated in the following video:
6.2. Simulation Preview¶
Click on a simulation in the list to open and see its contents in a new tab.
Figure 1: Open Simulation Viewer
The first section at the top, ‘Home’ provides a real-time status of the simulation while it is running. The panels allow you the visualize different elements of the running job. Some useful information to examine are energy balance, minimum time-step history and time remaining for completion. Energy balance provides incite into detecting any abnormalities in the simulation and, if required, kills it before the end time. You can also click on the last section ‘Errors and Warnings’ to identify any issues with the simulation.
Figure 2: Simulation Details
Simulation Processing Statuses¶
Here is a graphical representation of the processing statues a simulation runs through while solving:
Figure 3: Simulation Processing Statuses
6.3. Simulation Errors and Warnings¶
View all the errors and warning from simulations files under this tab in your simulations. This reduces the need of searching for errors in your simulation files.
Figure 1: Simulation with No Errors or Warnings
Email Notifications¶
If you have an email linked to your account, you’ll also receive warning and error messages once the simulation is done solving via email. To update your email, click the down arrow under your name at the top right corner of the screen (1) and choose ‘Settings’ (2). Then under ‘Info’ (3), input your desired email in the space provided (4).
Figure 2: Update Email
Here are some examples of email notifications we may get of errors in our simulations
Figure 3: Email Notification Examples
6.4. HPC Job¶
In order to run a simulation on the HPC, you have to submit a job. To start a new job submission, click on ‘New Simulation’ in the upper right corner of your Simulations page and follow the instructions presented in the previous tutorial section: Job Submission. Submitting a job requires a specified configuration which can be reviewed after clicking on the respected simulation and going to the HPC Jobs tab at the top. This tab provides the job submission history such as the node the job was submitted to, the number of CPUs used, etc. The information can be useful as comparisons and guides for submitting new simulations.
Figure 1: HPC Job
6.5. Simulation Files¶
Simulation files are processed through the server and compute node to be available to you locally.
Figure 1: Client-Server-Compute Node File Location
All the output and log files generated by the solver (bin-outs, d3plot, solver.log etc.) are available in the Files tab (1). Download, share or view individual files by clicking on the 3 dots next to it (2). Add a new file at the top (3).
Figure 2: Simulation Files
Viewing a file opens it in another window that is adaptive to the file type. Here, you can review the file by utilizing the search bar (1) or download it (2).
Figure 3: File Viewer
Download or share multiple files at once by selecting them via the checkmark (1) and using the Selected drop-down menu (2).
Figure 4: Multiple Files Actions
New as of October, 2022, the data viewer supports JFIF images as shown in the following image.
Figure 5: JFIF Image Support
We can now specify the name of the file exported when exporting multiple files from the Simulation/Files.
File Watcher¶
You can watch files in Simulations using File Watcher which has options to refresh the timer and url. They following video shows an example:
Lucy Log¶
You can view lucy.log files for simulations and visualize the rate of communication between Lucy and d3VIEW.
Figure 6: Lucy Log
You can also change view type to log nester for lucy.log files which groups the aspects such as OUTPUT and ERROR.
Figure 7: Log Nester
6.6. Simulation Responses¶
Data output extracted from the simulation and its bin-outs, d3plots (nodal displacements, element_history, etc) are available in the Responses section (1). Any top, front and left view animations are available by default. Use the View Type and search bar (1) or the quick filters such as the image button (2) at the top to search through your responses.
Figure 1: Simulation Responses
You can perform actions on a single response (1) such as viewing in full screen, exporting, sharing or duplicating it. You can also perform actions to selected responses from the drop-down menu (2) such as creating a template from the responses or exporting them to PowerPoint.
Figure 2: Response Actions
Add a new Response to your simulation by using the data extraction tool.
Figure 3: Extract Responses
Curve Responses link with d3VIEW’s Curve Viewing Application Newton for enhanced analysis. To learn about Newton, follow this link.
View Images¶
Use the View Images button to quickly view images in a simulation.
Figure 4: View Images
Filtering¶
Click on the filter icon at the top to use customized filters for sifting through your simulation responses.
Figure 5: Filter Responses
The datatype filter has an array of filetypes to choose from including MDF/DAT file options which have been adde as of February 16, 2022.
Figure 6: Filter Data Source
Comparing Responses¶
Simulation responses can be compared in Simlytiks with other simulation or physical test responses. Let’s review
Comparing with a Template¶
We can compare responses using a template which will have visualizations set up already for us. Watch the following video to see how it’s done.
Comparing with a Template
Comparing without a Template¶
We can also compare without a template. The following shows how to do this with an example where the simulation is compared with a physical test.
Comparing without a Template to a Physical Test
Compare responses now has an option to set the extraction type to all simulations using a single button at the top.
Add records option available while comparing records of the page now shows filters and records can be selected based on filters.
Add Records option
Records selector filters and records can now be sorted and saved.
Added a refresh button in the remote lookup record selector view.
Refresh button
This process is the same depending if you are comparing from the Physical Tests or Simulations page. To see how this is done via a step-by-step image explanation, please navigate to the Physical Tests section on Comparing Responses.
6.7. Extracting Responses¶
As mentioned earlier, create a new response by modifying simulation data under “Extract Response” in the Simulation Responses tab.
Figure 1: Choose Extract Response
In the next window, you can choose from a few different data extraction options. The most common ways to extract data will be from a data source (1) or employing a transformation (2). For data sources, available options will be dependent on the database files of the simulation.
Figure 2: Choose Extraction Data Source
Finish all extractions by choosing “Extract” (1). Feel free to see a preview of your extraction first by clicking “Preview” (2).
Figure 3: Finish Extraction
Binout Extractor¶
The ls-dyna binout (binary output) extractor post-processes a variety of simulation files efficiently. Depending on the type of simulation, we’ll have a list of different file types we can choose. Here are the options available for a Occupant Belted simulation:
Figure 4: Binout Extractor Choose File
Here we’ve chosen nodout as our file type. The boxes show the labels and IDs of all database options available.
Figure 5: Binout Extractor
Then, we’ll select our components and IDs in the multi-select boxes. In this video example, we name our extraction “Displacement” and choose displacement components and node ID 1.
Binout Multi-Select
Find IDs¶
The Binout Extractor has an advanced feature for find specific IDs. We can use the Find IDs option instead of selecting IDs if we are unsure of which ID to select for a specific extraction. We’ll specify the scope to find a group of responses extracted as one and then decided which ID from the group we would like to extract individually. Let’s review an example using a Punch Specimen simulation.
After choosing binout in the response extraction window choose the file type (1), select the component (2) and name the response (3). Here, we are choosing elout/shell for the file, lower_eps_xy as the component and naming the response as such. We’ll then want to click on Find ID under the Ids section (4).
Figure 6: Choose File, Component and Find ID
This will give us a list of options we will fill-out as the scope for extracting the group of responses (scroll down to see them all). Here, we are choosing Any ID value (1), Any State (2), Sort by Y Max (3), Descending (4), and 5 as the Limit (5).
Figure 7: Find ID - Fill Out Scope
Click Extract to add the response. We’ll see (1) in the Enqueue as the extractor is processing.
Figure 8: Extract Group
Under our simulation responses, we’ll see the newly extracted response group. For this Punch simulation, we have a group of curves and want to look for the ID of the curve with the highest peak: the blue curve with ID 439.
Figure 9: Find ID for Highest Peak
Now, we can go back to our binout extractor and just extract that curve. Here are the settings we’ve chosen for it. The same file and component, but now we are searching for the 439 ID and selecting it. Make sure to give this response a unique name.
Figure 10: Extract Highest Peak
Once we extract, we’ll see the curve with the highest peak as an individual response in our simulation.
Figure 11: Highest Peak Response
d3plot Extractor¶
The ls-dyna d3plot extractor post-processes simulations in 3D visualizations and animations. d3plot is most commonly used for creating 3D models (with or without plastic strain) of our simulations but has an array of file options.
Figure 12: d3plot Extractor
Let’s review how to create a Peacock model using d3plot extractor. First, we’ll name out response and make sure to end it with the js3d.zip file extension for viewing in Peacock (1). Then, we’ll choose Peacock3D as our output type (2). Next, we’ll choose the Plastic Strain fringe type (3). (There are also options for von-Mises Stress and Thickness). Lastly, we’ll indicate the final state to be 100 (4). All other options can remain as the default (or as shown in the following image). Click extract to finish.
Figure 13: d3plot Peacock 3D Response Set-up
On our simulation responses tab, we’ll see our new response with a Peacock logo. Click on the logo to initiate it in peacock.
Figure 14: Peacock 3D Response in Simulation
We can now explore the model in 3D space. To learn how to navigate Peacock, check out that section here.
Figure 15: Peacock 3D Model
d3hsp Extractor¶
The ls-dyna d3hsp extractor is most commonly used to check the model information such as to investigate the causes of the simulation’s error termination, similar to a solver log. d3hsp can print all the information related the model and the solver states as the simulation is being solved.
Figure 16: d3hsp Extractor
Here are all the d3hsp options available for extraction. Read on to see examples of each.
Figure 17: d3hsp Options
Mass Summary¶
For this set-up, we’ve chosen d3hsp for the file name, Mass Summary for the file type and named the response.
Figure 18: d3hsp Mass Summary
This extraction gives us individual summary responses for each aspect of the simulation execution.
Figure 19: d3hsp Mass Summary Responses
Summary¶
For this set-up, we’ve chosen d3hsp for the file name, Summary for the file type and named the response.
Figure 20: d3hsp Summary
This extraction gives us individual responses for a summary of the simulation execution.
Figure 21: d3hsp Summary Responses
Errors¶
For this set-up, we’ve chosen d3hsp for the file name, Errors for the file type and named the response.
Figure 22: d3hsp Errors
This extraction gives us an individual response for solver errors.
Figure 23: d3hsp Errors Responses
Warnings¶
For this set-up, we’ve chosen d3hsp for the file name, Warnings for the file type and named the response.
Figure 24: d3hsp Warnings
This extraction gives us an individual response for solver Warnings.
Figure 25: d3hsp Warnings Responses
Control Cards¶
For this set-up, we’ve chosen d3hsp for the file name, Control Cards for the file type and named the response.
Figure 26: d3hsp Control Cards
This extraction gives us individuals responses for Control Cards.
Figure 27: d3hsp Control Cards Responses
Bill of Materials¶
For this set-up, we’ve chosen d3hsp for the file name, Control Cards for the file type and named the response.
Figure 28: d3hsp Bill of Materials
This extraction gives us individuals responses for Bill of Materials.
Figure 29: d3hsp Bill of Materials Responses
Material Details¶
For this set-up, we’ve chosen d3hsp for the file name, Control Cards for the file type and named the response.
Figure 30: d3hsp Material Details
This extraction gives us an individual response table for Material Details.
Figure 31: d3hsp Material Details Responses
Keyword Count¶
For this set-up, we’ve chosen d3hsp for the file name, Keyword Count for the file type and named the response.
Figure 32: d3hsp Keyword Count
This extraction gives us an individual response for Keyword Count.
Figure 33: d3hsp Keyword Count Responses
Contacts Summary¶
For this set-up, we’ve chosen d3hsp for the file name, Contacts Summary for the file type and named the response.
Figure 34: d3hsp Contacts Summary
This extraction gives us an individual table response for Contacts Summary.
Figure 35: d3hsp Contacts Summary Responses
Contacts Parameters¶
For this set-up, we’ve chosen d3hsp for the file name, Contacts Parameters for the file type and named the response.
Figure 36: d3hsp Contacts Parameters
This extraction gives us an individual table response for Contacts Parameters.
Figure 37: d3hsp Contacts Parameters Responses
Curve By ID¶
For this set-up, we’ve chosen d3hsp for the file name, Curve By ID for the file type and named the response.
Figure 36: d3hsp Curve By ID
This extraction gives us individual curve responses by ID.
Figure 37: d3hsp Curve By ID Responses
Digitized Curves¶
For this set-up, we’ve chosen d3hsp for the file name, Digitized Curves for the file type and named the response.
Figure 38: d3hsp Digitized Curves
This extraction gives us individual digitized curve responses.
Figure 39: d3hsp Digitized Curves Responses
nastran_pch Extractor¶
The nastran_pch extractor uses a data source from a NASTRAN simulation for response creation.
Figure 40: nastran_pch Extractor
Let’s review an example of extracting a response for a NASTRAN simulation. When setting up the extraction, we’ll want to indicate the subcase ID (1), entity ID (2) and entity component (3) as well as give the response a suitable name (4).
Figure 41: nastran_pch Extractor
Upon extraction, we’ll see the new response in the simulation, this one being a raw curve.
Figure 42: nastran_pch Extracted Response
We can extract more responses using the nastran_pch extractor or use dedicated template. Here is an example of responses in a NASTRAN template with the one created above indicated with an arrow. To learn more about Templates, c:ref:check out that section here. <Templates>
Figure 43: NASTRAN Response Template
Transformations¶
Applying transformations to simulation data involves employing a worker to a current simulation response. There are multiple ways to apply transformations, but the easiest way is to choose the worker from the Simple menu.
Figure 44: Simple Transformation
We can search for our desired worker or use the drop-down menu to sift through categories.
Choosing A Worker
Click on your desired worker to see it’s inputs. Here, we’ve chosen curve_reversepoints.
Figure 45: Choose Worker
Then, we’ll drag-and-drop the curve response to be transformed from the right side menu into the curve input and choose which axis to reverse.
Curve Reverse Points Set-Up
6.8. Simulation Mid-Run Extraction¶
NEW as of June 7, 2022: You can now extract stale/delete-and-extract/and extract transformations only. This avoids the need to manually remove old responses for a solving simulation.
Figure 1: Mid-Run Extraction
Here is an example:
Figure 2: Mid-Run Extraction Example
You can also use the refresh button if there are more responses to be extracted.
Figure 3: Refresh button
These options refresh data applied for partially completed simulation.
Figure 4: Refresh data
6.9. Simulation Tracker¶
If we are writing, editing and polishing simulations, we can create a database for tracking the run log. Let’s review.
Run Log Viewer Options¶
There are four different ways we can view our run log in the viewer. The following image illustrates these with examples:
Figure 1: Run Log Viewer Options
Ways to Track Runs¶
There are 3 ways to track runs:
Options A – Self-managed Tracker in Excel (current practice but denormalized) Option B – Managed Manually in d3VIEW using Databases Option C - Insert from a simulation or using a Worker
Let’s go over each.
Option A¶
For this option, we’ll continue to maintain the Excel but in de-normalized data as shown in the example image below. We’ll then drop the file in the Simlytiks data handler to visualizer.
Figure 1: Option A: Self-managed Tracker in Excel
Option B¶
For this option, we’ll create a database in d3VIEW and manually add records.
Figure 2: Option B: Managed Manually in d3VIEW using Databases
Let’s review the steps.
Step 1. Navigate to the Databases App
Step 2. Click on New Database
Step 3a. Input a name and some meta-data information
Step 3b. Define Fields by Dragging the inputs from the right menu
Step 3c. Add Users
Step 3d. Save
Step 4. The New Database is now created. Click on the Name to open
Step 5. Click ‘Add Record’ to add entry to the database
Last Step. Visualize records
Option C¶
For this option, we’ll create a database in d3VIEW and insert from a simulation or use a worker to populate the database as shown in the following image. (This requires simulations to be run and responses be available in d3VIEW).
Figure 3: Option C: Insert from a simulation or using a Worker
6.10. Simulation Sharing¶
NEW as of March 21, 2022: There is added support to share records with selected teammates.
Figure 1: Share Simulation Records
There is also support to share a public link to anyone even those who do not have a d3VIEW account.
Figure 2: Share Public Simulation Link
6.11. Simulation Comments¶
Under the Comments tab, add any important notes about the simulation. This is especially useful for team communication. As of March 19, 2022, you can now directly tag other d3VIEW users on your team as well as tag simulation IDs in a comment.
Figure 1: Simulation Comments
6.12. Simulation filters¶
Physical tests/Simulations can now be ordered randomly using filters.
Random
6.13. Join Split Files¶
New option available under each simulation in the menu list to Join split files.
New tab¶
Workflows/ Physicaltests/ Simulations can now re-opened in a new tab from option available in the context menu.
For additional questions about how to navigate the d3VIEW platform, please feel free to email our team at: support@d3view.com.
6.14. Nested Context menu¶
New nested context menu options are available for the simulation records in Submit HPC feature in Simulations page.
Nested Context Menu
6.15. Parent child¶
New option called ‘Enable parent/child view’ is available under preferences for Datatable records.
6.16. Detailed view¶
The Datatable header now contains a View dropdown which will allow the user to choose between Detailed view or Default view.
Detailed view
6.17. Additionals¶
New option called Additionals is added to the Datatable customize option, which will add/replace new columns to the records based on selection of records and template.
6.18. Filters¶
New integrated filters view is available for Datatables across the platform.
Reset option in Datatable now resets the non-default filters in the page.
6.19. Edit¶
Edit simulations now can support filter based selections for Project/Workflows/Templates.
filter based selections